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1
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Translation debugger
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Transeq -
Advanced translation of nucleic acid sequences into proteins
(Rice et al., 2000)
Show/Hide input files
Input
DNA multifasta
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Genetic code
Values: 0 (Standard); 1 (Standard (with
alternative initiation codons)); 2 (Vertebrate
Mitochondrial); 3 (Yeast Mitochondrial); 4 (Mold,
Protozoan, Coelenterate Mitochondrial and
Mycoplasma/Spiroplasma); 5 (Invertebrate
Mitochondrial); 6 (Ciliate Macronuclear and
Dasycladacean); 9 (Echinoderm Mitochondrial); 10
(Euplotid Nuclear); 11 (Bacterial); 12
(Alternative Yeast Nuclear); 13 (Ascidian
Mitochondrial); 14 (Flatworm Mitochondrial); 15
(Blepharisma Macronuclear); 16 (Chlorophycean
Mitochondrial); 21 (Trematode Mitochondrial); 22
(Scenedesmus obliquus); 23 (Thraustochytrium
Mitochondrial)
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Frame to translate
1; 2; 3; F (Forward three frames); -1; -2; -3; R
(Reverse three frames); 6 (All six frames)
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Regions to translate
If this is left blank, then the complete sequence
is translated. A set of regions is specified by
a set of pairs of positions. The positions are
integers. They are separated by any non-digit,
non-alpha character. Examples of region
specifications are: 56-78, 1:45, 67=99;765..888
1,5,8,10,23,45,57,99
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2
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Strain debugger
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